1. Exercitationes pro Divina Gratia Amsterdam 1636
2. A Peaceable and Temperate Plea for Paul's Presbytery in Scotland London 1642
3. A Sermon before the House of Commons, on Daniel, London 1644
4. The Due Right of Presbyteries London 1644
5. Lex Rex, or The Law and the Prince London 1644
6. A Sermon before the House of Lords on Luke 7:22 London 1645
7. The Trial and Triumph of Faith London 1645
8. The Divine Right Of Church Government and Excommunication London 1646
9. Christ Dying and Drawing Sinners to Himself London 1647
10. A Survey of the Spiritual Antichrist London 1648
11. A Free Disputation against Pretended Liberty of Conscience London 1649
12. The Last and Heavenly Speech and Glorious Departure of John, Viscount Kenmure Edinburgh 1649
13. Disputatio Scholastica de Divina Providentia Edinburgh 1649
14. The Covenant of Life Opened Edinburgh 1655
15. A Survey of 'The Survey of that Sum of Church Discipline' penned by Mr. Thomas Hooker London 1658
16. Influences of the Life of Grace London 1659
17. Joshua Redivivus, or Mr Rutherford's Letters 1664
18. Examen Arminianismi Utrecht 1668
19. A Testimony left by Mr. S. Rutherford to the Work of Reformation uncertain date
20. A Treatise on Prayer 1713
21. The Cruel Watchman, The Door of Salvation Opened Edinburgh 1735
22. Twelve Communion Sermons Glasgow 1876
23. Quaint Sermons Hodder & Stoughton, London 1885
24. Rutherford’s Catechism: Containing the Sum of Christian Religion. London, 1886
25. A discussing of some arguments against Cannons and ceremonies in God’s worship in David G. Mullan (ed.) Religious Controversy in Scotland 1625–1639. (Edinburgh: Scottish Historical Society, 1998), pp. 82–99

Ban đầu được lấy từ cuốn Thư của Samuel Rutherford của Andrew Bonar,[15], cập nhật và sửa chữa sau đó.